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## Warning: le package 'GenomicRanges' a été compilé avec la version R 4.1.2
## Warning: le package 'S4Vectors' a été compilé avec la version R 4.1.2
## Warning in get_regions_with_probes(regions_to_analyze, positions): The following regions selected have no probes to be analyzed thus were removed from the analysis:
## IGF2:alt-TSS-DMR
## Warning in dir.create(dir_name): '../ExampleOfReport/
## ZH2005406k1__ZH1609094r1__ZH1712576ms2_MethPctAnalysis' existe déjà
## Warning in dir.create(file.path(dir_name, "MethPctPlot_wholeGenome")): '../
## ExampleOfReport/ZH2005406k1__ZH1609094r1__ZH1712576ms2_MethPctAnalysis/
## MethPctPlot_wholeGenome' existe déjà
## Warning in dir.create(file.path(dir_name, "MethPctPlot_perRegion")): '../
## ExampleOfReport/ZH2005406k1__ZH1609094r1__ZH1712576ms2_MethPctAnalysis/
## MethPctPlot_perRegion' existe déjà

General information

Date of report 2022-04-27 17:48:15
Software version 0.8
Nb of tested samples 3
Names of tested samples ZH2005406k1 ZH1609094r1 ZH1712576ms2
Control population filename Control_population.csv.gz
Nb of tested cpg probes 522
Nb of tested regions 27
Mean size of tested regions 1622
Min|Max size of tested regions 11-5047
Mean probe count per tested region 19.33333
Min|Max probe count per tested region 1-61
Nb of tested control cpg probes 477
Nb of control regions 25
Mean size of control regions 1594.32
Min|Max size of control regions 11-5047
Mean probe count per control region 19.08
Min|Max probe count per control region 1-61
Date of report 2022-04-27 17:48:15



Methylation Percentage difference distribution per sample



Methylation Percentage per region per sample



Methylation Percentage difference per region

Median methylation Percentage (%)
Difference against ctrlPop
group region_name position_hg38 ctrlPop ZH2005406k1 ZH1609094r1 ZH1712576ms2
MLID DIRAS3:Ex2-DMR chr1:68046856-68047380 59.879 6.421 -19.979 -21.579
MLID PHP DIRAS3:TSS-DMR chr1:68050105-68051590 50.700 -7.700 -12.750 -14.700
MLID ERLIN2:Int6-DMR chr8:37747841-37748460 46.240 2.410 -8.790 -12.790
MLID FAM50B:TSS-DMR chr6:3848861-3849872 51.366 -8.366 -12.466 -45.266
MLID FANCC:Int1-DMR chr9:95313199-95313210 39.598 0.002 -3.698 -11.698
PHP GNAS A/B:TSS-DMR chr20:58888210-58890120 54.008 -7.908 -47.708 -48.208
BWS PHP GNAS-AS1:TSS-DMR chr20:58850924-58852977 46.005 -5.405 -13.105 -37.805
BWS PHP SRS GNAS-NESP:TSS-DMR chr20:58838984-58842960 51.494 -8.444 -13.294 27.656
PHP GNAS-XL:Ex1-DMR chr20:58854222-58856248 54.071 -8.721 -11.521 -41.121
MLID GRB10:alt-TSS-DMR chr7:50781471-50783173 47.893 -7.493 -14.893 -8.993
BWS SRS H19/IGF2:IG-DMR chr11:1997849-2002896 55.850 -8.250 -13.500 -12.700
BWS SRS IGF2:Ex9-DMR chr11:2132761-2133722 49.365 10.335 3.835 4.035
MLID IGF2R:Int2-DMR chr6:160005919-160006469 48.539 -3.189 -11.039 -10.389
MLID L3MBTL1:alt-TSS-DMR chr20:43513777-43514862 52.330 -7.230 -13.230 -14.030
MLID MCTS2P:TSS-DMR chr20:31547126-31547559 52.820 -10.320 -13.620 -13.520
KOS14 MLID PHP TS14 MEG3:TSS-DMR chr14:100824219-100827519 51.972 -5.772 -12.572 -11.172
MLID MEST:alt-TSS-DMR chr7:130490281-130493269 53.496 -8.496 -12.696 -12.796
MLID NAP1L5:TSS-DMR chr4:88697173-88698085 54.354 -8.654 -10.054 -11.554
MLID PEG10:TSS-DMR chr7:94656330-94657930 52.075 -6.225 -12.975 -46.575
MLID PEG13:TSS-DMR chr8:140098508-140100981 57.230 -6.830 -11.530 -13.130
MLID PEG3:TSS-DMR chr19:56837836-56841760 54.793 -6.693 -14.143 -15.643
KOS14 MLID TNDM PLAGL1:alt-TSS-DMR chr6:144007284-144008750 55.291 -12.091 -15.541 -14.841
MLID PPIEL:Ex1-DMR chr1:39559299-39559743 67.457 -7.257 -10.457 -16.357
MLID SNU13:alt-TSS-DMR chr22:41681935-41682719 41.485 -3.285 -8.885 -8.585
MLID WDR27:Int13-DMR chr6:169654634-169655236 53.589 -9.739 -13.939 -18.239
BWS MLID WRB:alt-TSS-DMR chr21:39385765-39386282 46.887 -6.787 -11.987 -12.187
MLID ZNF331:alt-TSS-DMR1 chr19:53537520-53538911 45.468 -4.418 -9.918 -11.468



Methylation Percentage profiles

DIRAS3:Ex2-DMR

DIRAS3:TSS-DMR

ERLIN2:Int6-DMR

FAM50B:TSS-DMR

FANCC:Int1-DMR

GNAS A/B:TSS-DMR

GNAS-AS1:TSS-DMR

GNAS-NESP:TSS-DMR

GNAS-XL:Ex1-DMR

GRB10:alt-TSS-DMR

H19/IGF2:IG-DMR

IGF2:Ex9-DMR

IGF2R:Int2-DMR

L3MBTL1:alt-TSS-DMR

MCTS2P:TSS-DMR

MEG3:TSS-DMR

MEST:alt-TSS-DMR

NAP1L5:TSS-DMR

PEG10:TSS-DMR

PEG13:TSS-DMR

PEG3:TSS-DMR

PLAGL1:alt-TSS-DMR

PPIEL:Ex1-DMR

SNU13:alt-TSS-DMR

WDR27:Int13-DMR

WRB:alt-TSS-DMR

ZNF331:alt-TSS-DMR1


Methylation Percentage profiles 2

DIRAS3:Ex2-DMR

DIRAS3:TSS-DMR

ERLIN2:Int6-DMR

FAM50B:TSS-DMR

FANCC:Int1-DMR

GNAS A/B:TSS-DMR

GNAS-AS1:TSS-DMR

GNAS-NESP:TSS-DMR

GNAS-XL:Ex1-DMR

GRB10:alt-TSS-DMR

H19/IGF2:IG-DMR

IGF2:Ex9-DMR

IGF2R:Int2-DMR

L3MBTL1:alt-TSS-DMR

chr start end strand gene_name exonStarts exonEnds
26460 chr20 43514440 43541895
L3MBTL1 - NR_165190 43514440,43515008,43515291,43516092,43528656,43529263,43530283,43532772,43533341,43534007,43534283,43534827,43535836,43536096,43536408,43540150,43540752, 43514776,43515159,43515415,43516177,43528745,43529368,43530419,43532924,43533418,43534093,43534394,43534942,43535936,43536294,43536458,43540308,43541895,
26461 chr20 43514440 43541895
L3MBTL1 - NR_165191 43514440,43515008,43515291,43516092,43528656,43529202,43530283,43532772,43533341,43534007,43534283,43534745,43535836,43536096,43536408,43540150,43540752, 43514776,43515159,43515415,43516177,43528745,43529368,43530419,43532924,43533418,43534093,43534394,43534942,43535936,43536294,43536458,43540308,43541895,
26462 chr20 43514440 43541895
L3MBTL1 - NR_165192 43514440,43515008,43515291,43516092,43528656,43529210,43530283,43532772,43533341,43534007,43534283,43534827,43535836,43536096,43536408,43540150,43540752, 43514776,43515159,43515415,43516177,43528745,43529368,43530419,43532924,43533418,43534093,43534394,43534942,43535936,43536294,43536458,43540308,43541895,
26463 chr20 43514440 43541895
L3MBTL1 - NR_165193 43514440,43515008,43515291,43516092,43528656,43529263,43530283,43532772,43533341,43534007,43534283,43534827,43535836,43536100,43536408,43540150,43540752, 43514776,43515159,43515415,43516177,43528745,43529368,43530419,43532924,43533418,43534093,43534394,43534942,43535936,43536294,43536458,43540308,43541895,
26464 chr20 43514440 43541895
L3MBTL1 - NR_165194 43514440,43515008,43515291,43516092,43528656,43529263,43530283,43532772,43533341,43534007,43534283,43534827,43535836,43536096,43536408,43540150,43540752,43540933, 43514776,43515159,43515415,43516177,43528745,43529368,43530419,43532924,43533418,43534093,43534394,43534942,43535936,43536294,43536458,43540308,43540815,43541895,
26465 chr20 43514440 43541895
L3MBTL1 - NR_165195 43514440,43515008,43515291,43516092,43528656,43529202,43530283,43532772,43533341,43534007,43534283,43534827,43535836,43536096,43536408,43540150,43540752, 43514776,43515159,43515415,43516177,43528745,43529368,43530419,43532924,43533418,43534093,43534394,43534942,43535936,43536294,43536458,43540308,43541895,
26466 chr20 43514440 43541895
L3MBTL1 - NR_165196 43514440,43515008,43515291,43516092,43528656,43529202,43530283,43532772,43533341,43534007,43534283,43534827,43535836,43536096,43536408,43540021,43540752, 43514776,43515159,43515415,43516177,43528745,43529368,43530419,43532924,43533418,43534093,43534394,43534942,43535936,43536294,43536458,43540308,43541895,

MCTS2P:TSS-DMR

MEG3:TSS-DMR

chr start end strand gene_name exonStarts exonEnds
41266 chr14 100826107 100861023
MEG3 - NR_046465 100826107,100828707,100829033,100831420,100836166,100845457,100860690, 100826217,100828816,100829787,100831534,100836300,100845533,100861023,
41267 chr14 100826107 100861023
MEG3 - NR_046464 100826107,100828707,100829033,100835735,100836041,100836166,100845457,100860690, 100826217,100828816,100829749,100835879,100836075,100836300,100845533,100861023,
41271 chr14 100826107 100854305
MEG3 - NR_046473 100826107,100828707,100829033,100831420,100836166,100845457,100845875, 100826217,100828816,100829749,100831534,100836300,100845533,100854305,
41274 chr14 100826107 100861023
MEG3 - NR_003530 100826107,100828707,100829033,100831420,100832511,100834631,100836166,100845457,100860690, 100826217,100828816,100829749,100831534,100832641,100834751,100836300,100845533,100861023,
41275 chr14 100826107 100861023
MEG3 - NR_046470 100826107,100828707,100829033,100832511,100835735,100836166,100845457,100860690, 100826217,100828816,100829749,100832641,100835879,100836300,100845533,100861023,

MEST:alt-TSS-DMR

NAP1L5:TSS-DMR

PEG10:TSS-DMR

chr start end strand gene_name exonStarts exonEnds
65197 chr7 94584979 94656133
SGCE - NM_001346717 94584979,94588688,94598774,94600645,94603289,94618757,94623324,94628201,94629718,94655989, 94585515,94588732,94598963,94600857,94603452,94618956,94623397,94628359,94629841,94656133,
65199 chr7 94584979 94656133
SGCE - NM_001346715 94584979,94588688,94598774,94600645,94603289,94618757,94623324,94628201,94629718,94639340,94655989, 94585515,94588732,94598963,94600857,94603452,94618956,94623397,94628359,94629841,94639448,94656133,
67002 chr7 94656324 94669694
PEG10 - NM_001184961 94656324,94663333, 94656580,94669694,
67003 chr7 94656369 94669694
PEG10 - NM_001040152 94656369,94663333, 94656580,94669694,
67004 chr7 94656369 94669694
PEG10 - NM_001184962 94656369,94663333, 94656580,94669694,
67005 chr7 94656324 94669694
PEG10 - NM_001172437 94656324,94663333, 94656591,94669694,
67006 chr7 94656369 94669694
PEG10 - NM_001172438 94656369,94663333, 94656591,94669694,
67007 chr7 94656324 94669694
PEG10 - NM_015068 94656324,94663333, 94656580,94669694,

PEG13:TSS-DMR

PEG3:TSS-DMR

chr start end strand gene_name exonStarts exonEnds
25855 chr19 56774555 56840726
ZIM2 - NM_001369773 56774555,56779376,56781952,56789871,56817745,56818599,56821650,56822752,56823589,56824261,56836017,56840581, 56775529,56779472,56782121,56789951,56817838,56818702,56821754,56822836,56823679,56824427,56836104,56840726,
25858 chr19 56840901 56848556
MIMT1 - NR_024059 56840901,56847951, 56841586,56848556,
25859 chr19 56810082 56840726
PEG3 - NM_001369719 56810082,56818599,56821650,56822752,56823589,56824261,56826387,56836017,56840581, 56817579,56818702,56821754,56822836,56823679,56824741,56826463,56836104,56840726,
25860 chr19 56810082 56840726
PEG3 - NM_001369720 56810082,56817745,56818599,56821650,56822752,56823589,56824261,56826387,56833289,56833642,56836017,56840586, 56817579,56817838,56818702,56821754,56822836,56823679,56824427,56826463,56833420,56833763,56836104,56840726,
25861 chr19 56810082 56840726
PEG3 - NM_001369718 56810082,56817745,56818599,56821650,56822752,56823589,56824261,56826387,56836017,56840581, 56817579,56817838,56818702,56821754,56822836,56823679,56824741,56826463,56836104,56840726,
25862 chr19 56810082 56840726
PEG3 - NM_001369717 56810082,56817745,56818599,56821650,56822752,56823589,56824261,56836017,56840586, 56817579,56817838,56818702,56821754,56822836,56823679,56824741,56836104,56840726,
25863 chr19 56810082 56840726
PEG3 - NM_001146187 56810082,56817745,56818599,56821650,56822752,56823589,56824261,56836017,56840581, 56817579,56817838,56818702,56821754,56822836,56823679,56824427,56836104,56840726,
25864 chr19 56810082 56840726
PEG3 - NM_001146184 56810082,56817745,56818599,56821650,56822752,56823592,56824261,56836017,56840581, 56817579,56817835,56818702,56821754,56822836,56823679,56824741,56836104,56840726,
25865 chr19 56774555 56840726
ZIM2 - NM_015363 56774555,56779376,56781952,56789871,56818599,56821650,56822752,56823589,56824261,56836017,56840586, 56775529,56779472,56782121,56789951,56818702,56821754,56822836,56823679,56824427,56836104,56840726,
25866 chr19 56810082 56840726
PEG3 - NM_001146185 56810082,56817745,56818599,56821650,56822752,56823592,56824261,56836017,56840581, 56817579,56817835,56818702,56821754,56822836,56823679,56824427,56836104,56840726,
25867 chr19 56774555 56840726
ZIM2 - NM_001369774 56774555,56779376,56781952,56789871,56817745,56818599,56821650,56822752,56823589,56824261,56836017,56840586, 56775529,56779472,56782121,56789951,56817838,56818702,56821754,56822836,56823679,56824427,56836104,56840726,
25868 chr19 56774555 56840729
ZIM2 - NM_001146327 56774555,56779376,56781952,56789871,56818599,56821650,56822752,56823589,56824261,56826387,56836017,56840586, 56775529,56779472,56782121,56789951,56818702,56821754,56822836,56823679,56824514,56826463,56836104,56840729,
25869 chr19 56774555 56840726
ZIM2 - NM_001146326 56774555,56779376,56781952,56789871,56818599,56821650,56822752,56823589,56824261,56826387,56836017,56840586, 56775529,56779472,56782121,56789951,56818702,56821754,56822836,56823679,56824427,56826463,56836104,56840726,
25870 chr19 56810082 56837808
PEG3 - NM_001369733 56810082,56817745,56818599,56821650,56822752,56823589,56824261,56836017,56837751, 56817579,56817838,56818702,56821754,56822836,56823679,56824427,56836104,56837808,
25871 chr19 56810082 56840726
PEG3 - NM_001369735 56810082,56818599,56821650,56822752,56823589,56824261,56836017,56840581, 56817579,56818702,56821754,56822836,56823679,56824427,56836104,56840726,
25872 chr19 56810082 56840726
PEG3 - NM_001369734 56810082,56818599,56821650,56822752,56823589,56824261,56826387,56836017,56840581, 56817579,56818702,56821754,56822836,56823679,56824427,56826463,56836104,56840726,
25873 chr19 56810082 56840726
PEG3 - NM_001369736 56810082,56818599,56821650,56822752,56823589,56824261,56836017,56840581, 56817579,56818702,56821754,56822836,56823679,56824514,56836104,56840726,
25874 chr19 56810082 56840726
PEG3 - NM_001369732 56810082,56817745,56818599,56821650,56822752,56823589,56824261,56826387,56836017,56840586, 56817579,56817838,56818702,56821754,56822836,56823679,56824514,56826463,56836104,56840726,
25875 chr19 56810082 56840726
PEG3 - NM_001369731 56810082,56817745,56818599,56821650,56822752,56823589,56824261,56826387,56833289,56836017,56840581, 56817579,56817838,56818702,56821754,56822836,56823679,56824427,56826463,56833420,56836104,56840726,
25876 chr19 56810082 56840726
PEG3 - NM_001369729 56810082,56817745,56818599,56821650,56822752,56823589,56824261,56826387,56836017,56840581, 56817579,56817838,56818702,56821754,56822836,56823679,56824514,56826463,56836104,56840726,
25877 chr19 56810082 56840726
PEG3 - NM_001369730 56810082,56817745,56818599,56821650,56822752,56823589,56824261,56833289,56836017,56840581, 56817579,56817838,56818702,56821754,56822836,56823679,56824427,56833420,56836104,56840726,
25878 chr19 56810082 56840726
PEG3 - NM_001369728 56810082,56817745,56818599,56821650,56822752,56823589,56824261,56826387,56829782,56836017,56840581, 56817579,56817838,56818702,56821754,56822836,56823679,56824427,56826463,56829921,56836104,56840726,
25879 chr19 56810082 56840726
PEG3 - NM_001369727 56810082,56817745,56818599,56821650,56822752,56823589,56824261,56826387,56836017,56840581, 56817579,56817838,56818702,56821754,56822836,56823679,56824512,56826463,56836104,56840726,
25880 chr19 56810082 56840726
PEG3 - NM_001369726 56810082,56817745,56818599,56821650,56822752,56823589,56824261,56833289,56833642,56836017,56840581, 56817579,56817838,56818702,56821754,56822836,56823679,56824427,56833420,56833763,56836104,56840726,
25881 chr19 56810082 56840726
PEG3 - NM_001369725 56810082,56817745,56818599,56821650,56822752,56823589,56824261,56836017,56840586, 56817579,56817838,56818702,56821754,56822836,56823679,56824427,56836104,56840726,
25882 chr19 56810082 56840726
PEG3 - NM_001369724 56810082,56817745,56818599,56821650,56822752,56823589,56824261,56826387,56833289,56833642,56836017,56840581, 56817579,56817838,56818702,56821754,56822836,56823679,56824427,56826463,56833420,56833763,56836104,56840726,
25883 chr19 56774555 56840726
ZIM2 - NR_163140 56774555,56779376,56781952,56782399,56789871,56818599,56821650,56822752,56823589,56824261,56826387,56836017,56840581, 56775529,56779472,56782121,56782471,56789951,56818702,56821754,56822836,56823679,56824427,56826463,56836104,56840726,
25884 chr19 56774555 56840726
ZIM2 - NR_163141 56774555,56779376,56781952,56782399,56789871,56817745,56818599,56821650,56822752,56823589,56824261,56836017,56840581, 56775529,56779472,56782121,56782471,56789951,56817838,56818702,56821754,56822836,56823679,56824427,56836104,56840726,
25885 chr19 56774555 56840726
ZIM2 - NR_163142 56774555,56779376,56781952,56782399,56789871,56817745,56818599,56821650,56822752,56823589,56824261,56833289,56836017,56840581, 56775529,56779472,56782121,56782471,56789951,56817838,56818702,56821754,56822836,56823679,56824427,56833420,56836104,56840726,
25886 chr19 56774555 56840726
ZIM2 - NR_163143 56774555,56779376,56781952,56782399,56789871,56818599,56821650,56822752,56823589,56824261,56826387,56836017,56840581, 56775529,56779472,56782121,56782471,56789951,56818702,56821754,56822836,56823679,56824741,56826463,56836104,56840726,
25887 chr19 56831017 56840726
PEG3 - NR_161476 56831017,56833642,56836017,56840586, 56833420,56833763,56836104,56840726,
25888 chr19 56831017 56840726
PEG3 - NR_161475 56831017,56833642,56836017,56840581, 56833420,56833763,56836104,56840726,

PLAGL1:alt-TSS-DMR

chr start end strand gene_name exonStarts exonEnds
71690 chr6 144004915 144008730
HYMAI - NR_002768 144004915, 144008730,
71694 chr6 143940299 144008259
PLAGL1 - NM_006718 143940299,143947984,143960468,143964786,143966157,143968906,144008089, 143942663,143948460,143960542,143964818,143966230,143968978,144008259,
71695 chr6 143940299 144008259
PLAGL1 - NM_001080954 143940299,143947984,143960468,143964786,143968906,143985134,144008089, 143942663,143948460,143960542,143964818,143968978,143985174,144008259,
71696 chr6 143940299 144008259
PLAGL1 - NM_001080953 143940299,143947984,143960468,143964786,143966157,143968906,144008089, 143942663,143948460,143960542,143964818,143966198,143968978,144008259,
71697 chr6 143940299 144008259
PLAGL1 - NM_001080956 143940299,143960468,143964786,143966157,143968906,144008089, 143942663,143960542,143964818,143966212,143968978,144008259,
71698 chr6 143940299 144008259
PLAGL1 - NM_001289049 143940299,143947984,143960468,143964786,143968906,144008089, 143942663,143948460,143960542,143964818,143968978,144008259,
71699 chr6 143940299 144008259
PLAGL1 - NM_001317161 143940299,143947984,143960468,143964786,143966157,143968906,144008089, 143942663,143948460,143960556,143964818,143966198,143968978,144008259,
71700 chr6 143940299 144008259
PLAGL1 - NM_001289041 143940299,143960468,143964786,143966157,143968906,144008089, 143942663,143960556,143964818,143966198,143968978,144008259,
71701 chr6 143940299 144008259
PLAGL1 - NM_001289048 143940299,143947984,143960468,143964786,143966157,143968906,144008089, 143942663,143948460,143960542,143964818,143966212,143968978,144008259,
71702 chr6 143940299 144008259
PLAGL1 - NM_001317160 143940299,143960468,143964786,143966157,143968906,144008089, 143942663,143960542,143964818,143966198,143968978,144008259,
71703 chr6 143940299 144008259
PLAGL1 - NM_001080952 143940299,143947984,143960468,143964786,143966157,143968906,144008089, 143942663,143948460,143960556,143964818,143966230,143968978,144008259,
71704 chr6 143940299 144008259
PLAGL1 - NM_001317162 143940299,143947984,143960468,143964786,143966157,143968906,143985134,144008089, 143942663,143948460,143960542,143964818,143966198,143968978,143985174,144008259,
71705 chr6 143940299 144008259
PLAGL1 - NM_001289045 143940299,143947984,143960468,143964786,143965849,143968906,144008089, 143942663,143948460,143960542,143964818,143966198,143968978,144008259,
71706 chr6 143940299 144008416
PLAGL1 - NM_001289047 143940299,143947984,143968906,144008089, 143942663,143948460,143968978,144008416,
71707 chr6 143940299 144008259
PLAGL1 - NM_001289046 143940299,143947984,143960468,143964786,143965179,143966157,143968906,143985134,144008089, 143942663,143948460,143960580,143964818,143965303,143966285,143968978,143985174,144008259,

PPIEL:Ex1-DMR

SNU13:alt-TSS-DMR

WDR27:Int13-DMR

WRB:alt-TSS-DMR

ZNF331:alt-TSS-DMR1